Genome annotation for 315 genomes was retrieved from Ensembl (release 96), Ensembl metazoa (release 43) and Ensembl plants (release 43) as of 5/15/2019. Common names (e.g., “Mouse”) are used for some species in Ensembl. In addition, 2031 genomes are annotated based on STRING-db (See list). These genomes are marked as “Mus musculus STRINGdb”. If a genome is annotated in both Ensembl and STRING-db, the Ensembl Genome (e.g., “Mouse”) should be used as it is more up-to-date and contains more information.
|
Ensembl (Release 96, May 2019) |
|
|
Taxon ID |
Genome (version) |
Academic Name |
KEGG |
6239 |
Caenorhabditis |
caenorhabditis |
cel |
7227 |
Drosophila melanogaster (BDGP6.22) |
drosophila melanogaster |
dme |
9606 |
Human |
homo |
hsa |
10090 |
Mouse (GRCm38.p6) |
mus musculus |
mmu |
10116 |
Rat |
rattus |
rno |
7955 |
Zebrafish (GRCz11) |
danio rerio |
dre |
9598 |
Chimpanzee |
pan |
ptr |
9031 |
Chicken (GRCg6a) |
gallus gallus |
gga |
9615 |
Dog |
canis |
cfa |
9913 |
Cow (ARS-UCD1.2) |
bos taurus |
bta |
9823 |
Pig |
sus |
ssc |
8364 |
Xenopus (JGI 4.2) |
xenopus tropicalis |
xtr |
9544 |
Macaque |
macaca |
mcc |
13616 |
Opossum (monDom5) |
monodelphis domestica |
mdo |
9258 |
Platypus |
ornithorhynchus |
oaa |
7719 |
C.intestinalis (KH) |
ciona intestinalis |
cin |
9796 |
Horse |
equus |
ecb |
59729 |
Zebra Finch (taeGut3.2.4) |
taeniopygia guttata |
tgu |
9646 |
Panda |
ailuropoda |
aml |
9601 |
Orangutan (PPYG2) |
pongo abelii |
pon |
9103 |
Turkey |
meleagris |
mgp |
28377 |
Anole lizard (AnoCar2.0) |
anolis carolinensis |
acs |
9597 |
Bonobo |
pan |
pps |
9305 |
Tasmanian devil (Devil_ref v7.0) |
sarcophilus harrisii |
shr |
9685 |
Cat |
felis |
fca |
31033 |
Fugu (FUGU5) |
takifugu rubripes |
tru |
9595 |
Gorilla |
gorilla |
ggo |
8090 |
Japanese medaka HdrR (ASM223467v1) |
oryzias latipes |
ola |
8090 |
Japanese |
oryzias |
ola |
8090 |
Japanese medaka HSOK (ASM223469v1) |
oryzias latipes hsok |
ola |
10181 |
Naked |
heterocephalus |
hgl |
10181 |
Naked mole-rat female (HetGla_female_1.0) |
heterocephalus glaber female |
hgl |
10029 |
Chinese |
cricetulus |
cge |
10029 |
Chinese hamster CHOK1GS (CHOK1GS_HDv1) |
cricetulus griseus chok1gshd |
cge |
10029 |
Chinese |
cricetulus |
cge |
106582 |
Zebra mbuna (M_zebra_UMD2a) |
maylandia zebra |
mze |
59894 |
Flycatcher |
ficedula |
fab |
9925 |
Goat (ARS1) |
capra hircus |
chx |
7897 |
Coelacanth |
latimeria |
lcm |
9541 |
Crab-eating macaque (Macaca_fascicularis_5.0) |
macaca fascicularis |
mcf |
72004 |
Wild |
bos |
bom |
8083 |
Platyfish (X_maculatus-5.0-male) |
xiphophorus maculatus |
xma |
13735 |
Chinese |
pelodiscus |
pss |
74533 |
Tiger (PanTig1.0) |
panthera tigris altaica |
ptg |
9940 |
Sheep |
ovis |
oas |
9483 |
Marmoset (ASM275486v1) |
callithrix jacchus |
cjc |
61853 |
Gibbon |
nomascus |
nle |
29073 |
Polar bear (UrsMar_1.0) |
ursus maritimus |
umr |
1026970 |
Upper |
nannospalax |
ngi |
9986 |
Rabbit (OryCun2.0) |
oryctolagus cuniculus |
ocu |
61622 |
Golden |
rhinopithecus |
rro |
93934 |
Japanese quail (Coturnix_japonica_2.0) |
coturnix japonica |
cjo |
99883 |
Tetraodon |
tetraodon |
tng |
39432 |
Bolivian squirrel monkey (SaiBol1.0) |
saimiri boliviensis boliviensis |
sbq |
9785 |
Elephant |
loxodonta |
lav |
60711 |
Vervet-AGM (ChlSab1.1) |
chlorocebus sabaeus |
csab |
61621 |
Black |
rhinopithecus |
rbb |
7998 |
Channel catfish (IpCoco_1.2) |
ictalurus punctatus |
ipu |
8478 |
Painted |
chrysemys |
cpic |
51338 |
American beaver (C.can_genome_v1.0) |
castor canadensis |
ccan |
9157 |
Great |
parus |
pmaj |
244447 |
Tongue sole (Cse_v1.0) |
cynoglossus semilaevis |
csem |
8010 |
Northern |
esox |
els |
113540 |
Asian bonytongue (ASM162426v1) |
scleropages formosus |
sfm |
109280 |
Tiger |
hippocampus |
hcq |
103695 |
Central bearded dragon (pvi1.1) |
pogona vitticeps |
pvt |
7994 |
Mexican |
astyanax |
amex |
8081 |
Guppy (Guppy_female_1.0_MT) |
poecilia reticulata |
pret |
156563 |
Blue |
cyanistes |
ccae |
41447 |
Greater amberjack (Sdu_1.0) |
seriola dumerili |
sdu |
43700 |
Swamp |
monopterus |
malb |
37003 |
Mangrove rivulus (ASM164957v1) |
kryptolebias marmoratus |
kmr |
9135 |
Common |
serinus |
scan |
1676925 |
Paramormyrops kingsleyae (PKINGS_0.1) |
paramormyrops kingsleyae |
pki |
38626 |
Koala |
phascolarctos |
pcw |
10047 |
Mongolian gerbil (MunDraft-v1.0) |
meriones unguiculatus |
mun |
299123 |
Bengalese |
lonchura |
lsr |
32473 |
Monterrey platyfish (Xiphophorus_couchianus-4.0.1) |
xiphophorus couchianus |
xco |
10089 |
Ryukyu |
mus |
mcal |
9627 |
Red fox (VulVul2.2) |
vulpes vulpes |
vvp |
10093 |
Shrew |
mus |
mpah |
4932 |
Saccharomyces cerevisiae (R64-1-1) |
saccharomyces cerevisiae |
sce |
7757 |
Lamprey |
petromyzon |
|
7764 |
Hagfish (Eburgeri_3.2) |
eptatretus burgeri |
|
7918 |
Spotted |
lepisosteus |
|
8049 |
Cod (gadMor1) |
gadus morhua |
|
8078 |
Mummichog |
fundulus |
|
8128 |
Tilapia (Orenil1.0) |
oreochromis niloticus |
|
8153 |
Burtons |
haplochromis |
|
8154 |
Eastern happy (fAstCal1.2) |
astatotilapia calliptera |
|
8502 |
Australian |
crocodylus |
|
8508 |
Tuatara (ASM311381v1) |
sphenodon punctatus |
|
8663 |
Mainland |
notechis |
|
8790 |
Emu (droNov1) |
dromaius novaehollandiae |
|
8823 |
Great |
apteryx |
|
8824 |
Little spotted kiwi (aptOwe1) |
apteryx owenii |
|
8840 |
Duck |
anas |
|
8996 |
Helmeted guineafowl (NumMel1.0) |
numida meleagris |
|
9315 |
Wallaby |
notamacropus |
|
9358 |
Sloth (choHof1) |
choloepus hoffmanni |
|
9361 |
Armadillo |
dasypus |
|
9365 |
Hedgehog (eriEur1) |
erinaceus europaeus |
|
9371 |
Lesser |
echinops |
|
9531 |
Sooty mangabey (Caty_1.0) |
cercocebus atys |
|
9545 |
Pig-tailed |
macaca |
|
9555 |
Olive baboon (Panu_3.0) |
papio anubis |
|
9565 |
Gelada |
theropithecus |
|
9568 |
Drill (Mleu.le_1.0) |
mandrillus leucophaeus |
|
9643 |
American |
ursus |
|
9669 |
Ferret (MusPutFur1.0) |
mustela putorius furo |
|
9691 |
Leopard |
panthera |
|
9739 |
Dolphin (turTru1) |
tursiops truncatus |
|
9813 |
Hyrax |
procavia |
|
9978 |
Pika (OchPri2.0-Ens) |
ochotona princeps |
|
9994 |
Alpine |
marmota |
|
9999 |
Arctic ground squirrel (ASM342692v1) |
urocitellus parryii |
|
10020 |
Kangaroo |
dipodomys |
|
10036 |
Golden Hamster (MesAur1.0) |
mesocricetus auratus |
|
10096 |
Algerian |
mus |
|
10103 |
Steppe mouse (MUSP714) |
mus spicilegus |
|
10141 |
Guinea |
cavia |
|
10160 |
Degu (OctDeg1.0) |
octodon degus |
|
13146 |
Budgerigar |
melopsittacus |
|
28743 |
Sheepshead minnow (C_variegatus-1.0) |
cyprinodon variegatus |
|
30464 |
Chilean |
nothoprocta |
|
30538 |
Alpaca (vicPac1) |
vicugna pacos |
|
30608 |
Mouse |
microcebus |
|
30611 |
Bushbaby (OtoGar3) |
otolemur garnettii |
|
30732 |
Indian |
oryzias |
|
32507 |
Lyretail cichlid (NeoBri1.0) |
neolamprologus brichardi |
|
33528 |
Western |
gambusia |
|
34839 |
Long-tailed chinchilla (ChiLan1.0) |
chinchilla lanigera |
|
37293 |
Mas |
aotus |
|
37347 |
Tree Shrew (tupBel1) |
tupaia belangeri |
|
37548 |
Brazilian |
cavia |
|
38772 |
Agassizs desert tortoise (ASM289641v1) |
gopherus agassizii |
|
40217 |
Dark-eyed |
junco |
|
42254 |
Shrew (sorAra1) |
sorex araneus |
|
42514 |
Red-bellied |
pygocentrus |
|
43179 |
Squirrel (SpeTri2.0) |
ictidomys tridecemlineatus |
|
43346 |
American |
bison |
|
44394 |
White-throated sparrow (Zonotrichia_albicollis-1.0.1) |
zonotrichia albicollis |
|
48698 |
Amazon |
poecilia |
|
48699 |
Sailfin molly (P_latipinna-1.0) |
poecilia latipinna |
|
48701 |
Shortfin |
poecilia |
|
51337 |
Lesser Egyptian jerboa (JacJac1.0) |
jaculus jaculus |
|
51511 |
C.savignyi |
ciona |
|
52904 |
Turbot (ASM318616v1) |
scophthalmus maximus |
|
56723 |
Ballan |
labrus |
|
59463 |
Microbat (Myoluc2.0) |
myotis lucifugus |
|
61819 |
Midas |
amphilophus |
|
64144 |
Climbing perch (fAnaTes1.1) |
anabas testudineus |
|
69293 |
Stickleback |
gasterosteus |
|
79684 |
Prairie vole (MicOch1.0) |
microtus ochrogaster |
|
80966 |
Spiny |
acanthochromis |
|
80972 |
Clown anemonefish (AmpOce1.0) |
amphiprion ocellaris |
|
83772 |
Donkey |
equus |
|
94237 |
Ocean sunfish (ASM169857v1) |
mola mola |
|
96440 |
Argentine |
salvator |
|
99837 |
Daurian ground squirrel (ASM240643v1) |
spermophilus dauricus |
|
106734 |
Abingdon |
chelonoidis |
|
132585 |
Pink-footed goose (ASM259213v1) |
anser brachyrhynchus |
|
132908 |
Megabat |
pteropus |
|
144197 |
Bicolor damselfish (Stegastes_partitus-1.0.2) |
stegastes partitus |
|
161767 |
Orange |
amphiprion |
|
198806 |
Ruff (ASM143184v1) |
calidris pugnax |
|
205130 |
Zig-zag |
mastacembelus |
|
230844 |
Northern American deer mouse (HU_Pman_2.1) |
peromyscus maniculatus bairdii |
|
286419 |
Dingo |
canis |
|
303518 |
Makobe Island cichlid (PunNye1.0) |
pundamilia nyererei |
|
308060 |
Okarito |
apteryx |
|
321398 |
Blue-crowned manakin (Lepidothrix_coronata-1.0) |
lepidothrix coronata |
|
328815 |
Golden-collared |
manacus |
|
336983 |
Angola colobus (Cang.pa_1.0) |
colobus angolensis palliatus |
|
379532 |
Coquerels |
propithecus |
|
409849 |
Periophthalmus magnuspinnatus (PM.fa) |
periophthalmus magnuspinnatus |
|
425635 |
Spoon-billed |
calidris |
|
452646 |
American mink (NNQGG.v01) |
neovison vison |
|
591936 |
Ugandan |
piliocolobus |
|
885580 |
Damara mole rat (DMR_v1.0) |
fukomys damarensis |
|
1328070 |
Greater |
prolemur |
|
1737458 |
Capuchin (Cebus_imitator-1.0) |
cebus capucinus |
|
1841481 |
Yellowtail |
seriola |
|
1868482 |
Tarsier (Tarsius_syrichta-2.0.1) |
carlito syrichta |
|
|
|
|
|
|
Ensembl Plants (Release 43) |
|
|
Taxon |
Genome |
Academic |
KEGG |
3702 |
Arabidopsis thaliana (TAIR10) |
arabidopsis thaliana |
ath |
280699 |
Cyanidioschyzon |
cyanidioschyzon |
cme |
39947 |
Oryza sativa Japonica Group (IRGSP-1.0) |
oryza sativa |
osa |
436017 |
Ostreococcus |
ostreococcus |
olu |
3055 |
Chlamydomonas reinhardtii (Chlamydomonas_reinhardtii_v5.5) |
chlamydomonas reinhardtii |
cre |
3218 |
Physcomitrella |
physcomitrella |
ppp |
3694 |
Populus trichocarpa (Pop_tri_v3) |
populus trichocarpa |
pop |
29760 |
Vitis |
vitis |
vvi |
4558 |
Sorghum bicolor (Sorghum_bicolor_NCBIv3) |
sorghum bicolor |
sbi |
4577 |
Zea |
zea |
zma |
88036 |
Selaginella moellendorffii (v1.0) |
selaginella moellendorffii |
smo |
81972 |
Arabidopsis |
arabidopsis |
aly |
3847 |
Glycine max (Glycine_max_v2.1) |
glycine max |
gmx |
3880 |
Medicago |
medicago |
mtr |
15368 |
Brachypodium distachyon (Brachypodium_distachyon_v3.0) |
brachypodium distachyon |
bdi |
3659 |
Cucumis |
cucumis |
csv |
4081 |
Solanum lycopersicum (SL3.0) |
solanum lycopersicum |
sly |
4555 |
Setaria |
setaria |
sita |
2769 |
Chondrus crispus (ASM35022v2) |
chondrus crispus |
ccp |
130081 |
Galdieria |
galdieria |
gsl |
4113 |
Solanum tuberosum (SolTub_3.0) |
solanum tuberosum |
sot |
13333 |
Amborella |
amborella |
atr |
3641 |
Theobroma cacao (Theobroma_cacao_20110822) |
theobroma cacao |
tcc |
4533 |
Oryza |
oryza |
obr |
3760 |
Prunus persica (Prunus_persica_NCBIv2) |
prunus persica |
pper |
3885 |
Phaseolus |
phaseolus |
pvu |
214687 |
Musa acuminata (ASM31385v1) |
musa acuminata |
mus |
3711 |
Brassica |
brassica |
brp |
3555 |
Beta vulgaris (RefBeet-1.2.2) |
beta vulgaris |
bvg |
109376 |
Brassica |
brassica |
boe |
3916 |
Vigna radiata (Vradiata_ver6) |
vigna radiata |
vra |
3708 |
Brassica |
brassica |
bna |
29730 |
Gossypium raimondii (Graimondii2_0) |
gossypium raimondii |
gra |
3914 |
Vigna |
vigna |
var |
3871 |
Lupinus angustifolius (LupAngTanjil_v1.0) |
lupinus angustifolius |
lang |
4232 |
Helianthus |
helianthus |
han |
79200 |
Daucus carota (ASM162521v1) |
daucus carota |
dcr |
3983 |
Manihot |
manihot |
mesc |
49451 |
Nicotiana attenuata (NIATTr2) |
nicotiana attenuata |
nau |
4528 |
Oryza |
oryza |
|
4529 |
Oryza rufipogon (OR_W1943) |
oryza rufipogon |
|
4536 |
Oryza |
oryza |
|
4537 |
Oryza punctata (Oryza_punctata_v1.2) |
oryza punctata |
|
4538 |
Oryza |
oryza |
|
4565 |
Triticum aestivum (IWGSC) |
triticum aestivum |
|
4572 |
Triticum |
triticum |
|
39946 |
Oryza sativa Indica Group (ASM465v1) |
oryza indica |
|
40148 |
Oryza |
oryza |
|
40149 |
Oryza meridionalis (Oryza_meridionalis_v1.3) |
oryza meridionalis |
|
55577 |
Dioscorea |
dioscorea |
|
57577 |
Trifolium pratense (Trpr) |
trifolium pratense |
|
63677 |
Arabidopsis |
arabidopsis |
|
65489 |
Oryza barthii (O.barthii_v1) |
oryza barthii |
|
77586 |
Leersia |
leersia |
|
85692 |
Triticum dicoccoides (WEWSeq v.1.0) |
triticum dicoccoides |
|
112509 |
Hordeum |
hordeum |
|
200361 |
Aegilops tauschii (Aet v4.0) |
aegilops tauschii |
ats |
210143 |
Corchorus |
corchorus |
|
|
Actinidia chinensis Red5 (Red5_PS1_1.69.0) |
|
|
|
|
|
|
|
Ensembl Metazoa (Release 43) |
|
|
taxonID |
Genome |
Academic |
KEGG |
7668 |
Strongylocentrotus purpuratus (Spur_3.1) |
strongylocentrotus purpuratus |
spu |
46245 |
Drosophila |
drosophila |
dpo |
45351 |
Nematostella vectensis (ASM20922v1) |
nematostella vectensis |
nve |
7070 |
Tribolium |
tribolium |
tca |
6279 |
Brugia malayi (Bmal-4.0) |
brugia malayi |
bmy |
7159 |
Aedes |
aedes |
aag |
6238 |
Caenorhabditis briggsae (CB4) |
caenorhabditis briggsae |
cbr |
7460 |
Apis |
apis |
ame |
7217 |
Drosophila ananassae (dana_caf1) |
drosophila ananassae |
dan |
7220 |
Drosophila |
drosophila |
der |
7222 |
Drosophila grimshawi (dgri_caf1) |
drosophila grimshawi |
dgr |
7230 |
Drosophila |
drosophila |
dmo |
7234 |
Drosophila persimilis (dper_caf1) |
drosophila persimilis |
dpe |
7238 |
Drosophila |
drosophila |
dse |
7240 |
Drosophila simulans (ASM75419v3) |
drosophila simulans |
dsi |
7244 |
Drosophila |
drosophila |
dvi |
7260 |
Drosophila willistoni (dwil_caf1) |
drosophila willistoni |
dwi |
7245 |
Drosophila |
drosophila |
dya |
10228 |
Trichoplax adhaerens (ASM15027v1) |
trichoplax adhaerens |
tad |
7029 |
Acyrthosiphon |
acyrthosiphon |
api |
7176 |
Culex quinquefasciatus (CpipJ2) |
culex quinquefasciatus |
cqu |
7425 |
Nasonia |
nasonia |
nvi |
6183 |
Schistosoma mansoni (ASM23792v2) |
schistosoma mansoni |
smm |
6945 |
Ixodes |
ixodes |
isc |
121224 |
Pediculus humanus (PhumU2) |
pediculus humanus |
phu |
6334 |
Trichinella |
trichinella |
tsp |
400682 |
Amphimedon queenslandica (Aqu1) |
amphimedon queenslandica |
aqu |
7209 |
Loa |
loa |
loa |
7091 |
Bombyx mori (ASM15162v1) |
bombyx mori |
bmor |
6412 |
Helobdella |
helobdella |
hro |
225164 |
Lottia gigantea (Lotgi1) |
lottia gigantea |
lgi |
13686 |
Solenopsis |
solenopsis |
soc |
29159 |
Crassostrea gigas (oyster_v9) |
crassostrea gigas |
crg |
37653 |
Octopus |
octopus |
obi |
6669 |
Daphnia pulex (V1.0) |
daphnia pulex |
dpx |
132113 |
Bombus |
bombus |
bim |
30195 |
Bombus terrestris (Bter_1.0) |
bombus terrestris |
bter |
77166 |
Dendroctonus |
dendroctonus |
dpa |
32264 |
Tetranychus urticae (ASM23943v1) |
tetranychus urticae |
tut |
7574 |
Lingula |
lingula |
lak |
12957 |
Atta cephalotes (Attacep1.0) |
atta cephalotes |
acep |
158441 |
Folsomia |
folsomia |
fcd |
136037 |
Zootermopsis nevadensis (ZooNev1.0) |
zootermopsis nevadensis |
zne |
6282 |
Onchocerca |
onchocerca |
|
7165 |
Anopheles gambiae (AgamP4) |
anopheles gambiae |
aga |
7375 |
Lucilia |
lucilia |
|
13037 |
Danaus plexippus (Dpv3) |
danaus plexippus |
dpl |
13249 |
Rhodnius |
rhodnius |
|
27923 |
Mnemiopsis leidyi (MneLei_Aug2011) |
mnemiopsis leidyi |
|
31234 |
Caenorhabditis |
caenorhabditis |
|
34506 |
Strongyloides ratti (S_ratti_ED321_v5_0_4) |
strongyloides ratti |
|
34740 |
Heliconius |
heliconius |
|
35525 |
Daphnia magna (daphmag2.4) |
daphnia magna |
|
36166 |
Megaselia |
megaselia |
|
39758 |
Mayetiola destructor (Mdes_1.0) |
mayetiola destructor |
|
43151 |
Anopheles |
anopheles |
|
48709 |
Orchesella cincta (ASM171814v1) |
orchesella cincta |
|
52283 |
Sarcoptes |
sarcoptes |
|
54126 |
Pristionchus pacificus (P_pacificus-5.0) |
pristionchus pacificus |
|
72036 |
Lepeophtheirus |
lepeophtheirus |
|
104782 |
Adineta vaga (AMS_PRJEB1171_v1) |
adineta vaga |
|
113334 |
Melitaea |
melitaea |
|
126957 |
Strigamia maritima (Smar1) |
strigamia maritima |
|
135651 |
Caenorhabditis |
caenorhabditis |
|
139649 |
Teleopsis dalmanni (Tel_dalmanni_2A_v1.0) |
teleopsis dalmanni |
|
179676 |
Culicoides |
culicoides |
|
217634 |
Anoplophora glabripennis (Agla_1.0) |
anoplophora glabripennis |
|
281687 |
Caenorhabditis |
caenorhabditis |
|
283909 |
Capitella teleta (Capitella teleta v1.0) |
capitella teleta |
|
315563 |
Belgica |
belgica |
|
407821 |
Stegodyphus mimosarum (Stegodyphus_mimosarum_v1) |
stegodyphus mimosarum |
|
669202 |
Thelohanellus |
thelohanellus |
|