Species

Genome annotation for 220 species was retrieved from Ensembl (release 92), Ensembl metazoa (release 40) and Ensembl plants (release 40) as of 7/15/2018.

 

Ensembl (Release 92)

 

 

 

taxon_id

Genome

Academic Name

Common Name

KEGG

6239

Caenorhabditis elegans (WBcel235)

caenorhabditis elegans

C.elegans

cel

7227

Fruitfly (BDGP6)

drosophila melanogaster

fruit fly

dme

9606

Human (GRCh38.p12)

homo sapiens

human

hsa

10090

Mouse (GRCm38.p6)

mus musculus

house mouse

mmu

10116

Rat (Rnor_6.0)

rattus norvegicus

Norway rat

rno

7955

Zebrafish (GRCz11)

danio rerio

zebrafish

dre

9598

Chimpanzee (Pan_tro_3.0)

pan troglodytes

chimpanzee

ptr

9031

Chicken (Gallus_gallus-5.0)

gallus gallus

chicken

gga

9615

Dog (CanFam3.1)

canis familiaris

dog

cfa

9913

Cow (UMD3.1)

bos taurus

cattle

bta

9823

Pig (Sscrofa11.1)

sus scrofa

pig

ssc

8364

Xenopus (JGI 4.2)

xenopus tropicalis

western clawed frog

xtr

9544

Macaque (Mmul_8.0.1)

macaca mulatta

rhesus monkey

mcc

13616

Opossum (monDom5)

monodelphis domestica

gray short-tailed opossum

mdo

9258

Platypus (OANA5)

ornithorhynchus anatinus

platypus

oaa

7719

C.intestinalis (KH)

ciona intestinalis

Sea squirt Ciona
intestinalis

cin

9796

Horse (Equ Cab 2)

equus caballus

horse

ecb

59729

Zebra Finch (taeGut3.2.4)

taeniopygia guttata

zebra finch

tgu

9646

Panda (ailMel1)

ailuropoda melanoleuca

giant panda

aml

9601

Orangutan (PPYG2)

pongo abelii

Bornean orangutan

pon

9103

Turkey (Turkey_2.01)

meleagris gallopavo

domestic turkey

mgp

28377

Anole lizard (AnoCar2.0)

anolis carolinensis

green anole

acs

9597

Bonobo (panpan1.1)

pan paniscus

bonobo

pps

9305

Tasmanian devil (Devil_ref
v7.0)

sarcophilus harrisii

Tasmanian devil

shr

9685

Cat (Felis_catus_8.0)

felis catus

domestic cat

fca

31033

Fugu (FUGU 4.0)

takifugu rubripes

torafugu

tru

9595

Gorilla (gorGor4)

gorilla gorilla

Western Lowland Gorilla

ggo

8090

Medaka (HdrR)

oryzias latipes

Japanese medaka

ola

10181

Naked mole-rat female (HetGla_female_1.0)

heterocephalus glaber female

naked mole-rat

hgl

10181

Naked mole-rat male (HetGla_1.0)

heterocephalus glaber male

naked mole-rat

hgl

10029

Chinese hamster CriGri
(CriGri_1.0)

cricetulus griseus crigri

Chinese hamster

cge

10029

Chinese hamster CHOK1GS (CHOK1GS_HDv1)

cricetulus griseus chok1gshd

Chinese hamster

cge

59894

Flycatcher (FicAlb_1.4)

ficedula albicollis

Collared flycatcher

fab

8839

Duck (BGI_duck_1.0)

anas platyrhynchos

mallard

apla

9925

Goat (ARS1)

capra hircus

goat

chx

7897

Coelacanth (LatCha1)

latimeria chalumnae

coelacanth

lcm

9541

Crab-eating macaque (Macaca_fascicularis_5.0)

macaca fascicularis

Crab-eating macaque

mcf

8083

Platyfish (Xipmac4.4.2)

xiphophorus maculatus

southern platyfish

xma

13735

Chinese softshell turtle (PelSin_1.0)

pelodiscus sinensis

Chinese softshell turtle

pss

9940

Sheep (Oar_v3.1)

ovis aries

Domestic sheep

oas

9483

Marmoset (ASM275486v1)

callithrix jacchus

white-tufted-ear marmoset

cjc

61853

Gibbon (Nleu_3.0)

nomascus leucogenys

Northern white-cheeked gibbon

nle

1026970

Upper Galilee mountains blind mole rat (S.galili_v1.0)

nannospalax galili

Upper Galilee mountains blind mole rat

ngi

9986

Rabbit (OryCun2.0)

oryctolagus cuniculus

rabbit

ocu

61622

Golden snub-nosed monkey (Rrox_v1)

rhinopithecus roxellana

Golden snub-nosed monkey

rro

99883

Tetraodon (TETRAODON 8.0)

tetraodon nigroviridis

spotted green pufferfish

tng

39432

Bolivian squirrel monkey (SaiBol1.0)

saimiri boliviensis boliviensis

Bolivian squirrel monkey

sbq

9785

Elephant (Loxafr3.0)

loxodonta africana

African savanna elephant

lav

60711

Vervet-AGM (ChlSab1.1)

chlorocebus sabaeus

African green monkey

csab

61621

Black snub-nosed monkey (ASM169854v1)

rhinopithecus bieti

Black snub-nosed monkey

rbb

7994

Cave fish (AstMex102)

astyanax mexicanus

Blind cave fish

amex

4932

Saccharomyces cerevisiae (R64-1-1)

saccharomyces cerevisiae

bakers yeast

sce

7757

Lamprey (Pmarinus_7.0)

petromyzon marinus

sea lamprey

 

7918

Spotted gar (LepOcu1)

lepisosteus oculatus

Spotted gar

 

8049

Cod (gadMor1)

gadus morhua

Atlantic cod

 

8128

Tilapia (Orenil1.0)

oreochromis niloticus

Nile tilapia

 

9315

Wallaby (Meug_1.0)

notamacropus eugenii

tammar wallaby

 

9358

Sloth (choHof1)

choloepus hoffmanni

Hoffmanns two-fingered sloth

9361

Armadillo (Dasnov3.0)

dasypus novemcinctus

nine-banded armadillo

9365

Hedgehog (eriEur1)

erinaceus europaeus

western European hedgehog

9371

Lesser hedgehog tenrec (TENREC)

echinops telfairi

small Madagascar hedgehog

9531

Sooty mangabey
(Caty_1.0)

cercocebus atys

Sooty mangabey

 

9545

Pig-tailed macaque (Mnem_1.0)

macaca nemestrina

Pig-tailed macaque

9555

Olive baboon (Panu_3.0)

papio anubis

Olive baboon

 

9568

Drill (Mleu.le_1.0)

mandrillus leucophaeus

Drill

 

9669

Ferret (MusPutFur1.0)

mustela putorius furo

Domestic ferret

 

9739

Dolphin (turTru1)

tursiops truncatus

bottlenosed dolphin

9813

Hyrax (proCap1)

procavia capensis

cape rock hyrax

 

9978

Pika (OchPri2.0-Ens)

ochotona princeps

American pika

 

10020

Kangaroo rat (Dord_2.0)

dipodomys ordii

Ords kangaroo rat

 

10036

Golden Hamster (MesAur1.0)

mesocricetus auratus

Golden Hamster

 

10089

Ryukyu mouse (CAROLI_EIJ_v1.1)

mus caroli

Ryukyu mouse

 

10093

Shrew mouse (PAHARI_EIJ_v1.1)

mus pahari

Shrew mouse

 

10096

Algerian mouse (SPRET_EiJ_v1)

mus spretus

algerian mouse

 

10141

Guinea Pig (Cavpor3.0)

cavia porcellus

domestic guinea pig

10160

Degu (OctDeg1.0)

octodon degus

Degu

 

30538

Alpaca (vicPac1)

vicugna pacos

alpaca

 

30608

Mouse Lemur (Mmur_3.0)

microcebus murinus

gray mouse lemur

 

30611

Bushbaby (OtoGar3)

otolemur garnettii

small-eared galago

34839

Long-tailed chinchilla (ChiLan1.0)

chinchilla lanigera

Long-tailed chinchilla

37293

Mas night monkey (Anan_2.0)

aotus nancymaae

Mas night monkey

 

37347

Tree Shrew (tupBel1)

tupaia belangeri

northern tree shrew

37548

Brazilian guinea pig (CavAp1.0)

cavia aperea

Brazilian guinea pig

42254

Shrew (sorAra1)

sorex araneus

European shrew

 

43179

Squirrel (SpeTri2.0)

ictidomys tridecemlineatus

thirteen-lined ground squirrel

48698

Amazon molly (Poecilia_formosa-5.1.2)

poecilia formosa

Amazon molly

 

51337

Lesser Egyptian jerboa (JacJac1.0)

jaculus jaculus

Lesser Egyptian jerboa

51511

C.savignyi (CSAV 2.0)

ciona savignyi

Sea squirt Ciona savignyi

59463

Microbat (Myoluc2.0)

myotis lucifugus

little brown bat

 

69293

Stickleback (BROAD S1)

gasterosteus aculeatus

three-spined
stickleback

79684

Prairie vole (MicOch1.0)

microtus ochrogaster

vole

 

132908

Megabat (pteVam1)

pteropus vampyrus

large flying fox

 

230844

Northern American deer mouse (Pman_1.0)

peromyscus maniculatus bairdii

Northern American deer mouse

336983

Angola colobus (Cang.pa_1.0)

colobus angolensis palliatus

Angola colobus

 

379532

Coquerels sifaka (Pcoq_1.0)

propithecus coquereli

Coquerels sifaka

 

885580

Damara mole rat (DMR_v1.0)

fukomys damarensis

Damara mole rat

 

1737458

Capuchin (Cebus_imitator-1.0)

cebus capucinus

White-headed capuchin

1868482

Tarsier (Tarsius_syrichta-2.0.1)

carlito syrichta

Philippine tarsier

 

 

 

 

 

 

Ensembl Plants 
(
Release 40)

 

 

 

taxon_id

Genome

Academic Name

Common Name

KEGG

3702

Arabidopsis thaliana (TAIR10)

arabidopsis thaliana

thale-cress

ath

280699

Cyanidioschyzon merolae (ASM9120v1)

cyanidioschyzon merolae

a red algae

cme

39947

Oryza sativa Japonica (IRGSP-1.0)

oryza sativa

Japonica rice

osa

436017

Ostreococcus lucimarinus (ASM9206v1)

ostreococcus lucimarinus

a green algae

olu

3055

Chlamydomonas reinhardtii
(v3.1)

chlamydomonas reinhardtii

a green algae

cre

3218

Physcomitrella patens (ASM242v1)

physcomitrella patens

a moss

ppp

3694

Populus trichocarpa (JGI2.0)

populus trichocarpa

western balsam poplar

pop

29760

Vitis vinifera (IGGP_12x)

vitis vinifera

wine grape

vvi

4558

Sorghum bicolor (Sorghum_bicolor_NCBIv3)

sorghum bicolor

 

sbi

4577

Zea mays (B73 RefGen_v4)

zea mays

maize

zma

88036

Selaginella moellendorffii (v1.0)

selaginella moellendorffii

a spike moss

smo

81972

Arabidopsis lyrata
(v.1.0)

arabidopsis lyrata

lyrate rockcress

aly

3847

Glycine max (Glycine_max_v2.0)

glycine max

 

gmx

3880

Medicago truncatula
(MedtrA17_4.0)

medicago truncatula

barrel medic

mtr

15368

Brachypodium distachyon (v1.0)

brachypodium distachyon

purple false brome

bdi

3659

Cucumis sativus (ASM407v2)

cucumis sativus

 

csv

4081

Solanum lycopersicum
(SL2.50)

solanum lycopersicum

 

sly

4555

Setaria italica (JGIv2.0)

setaria italica

foxtail millet

sita

2769

Chondrus crispus (ASM35022v2)

chondrus crispus

 

ccp

130081

Galdieria sulphuraria (ASM34128v1)

galdieria sulphuraria

 

gsl

4113

Solanum tuberosum (SolTub_3.0)

solanum tuberosum

potato

sot

13333

Amborella trichopoda (AMTR1.0)

amborella trichopoda

Amborella

atr

3641

Theobroma cacao (Theobroma_cacao_20110822)

theobroma cacao

cocoa

tcc

4533

Oryza brachyantha
(Oryza_brachyantha.v1.4b)

oryza brachyantha

 

obr

3760

Prunus persica
(Prunus_persica_NCBIv2)

prunus persica

 

pper

3885

Phaseolus vulgaris (PhaVulg1_0)

phaseolus vulgaris

 

pvu

214687

Musa acuminata
(MA1)

musa acuminata

banana

mus

3555

Beta vulgaris subsp. vulgaris (RefBeet-1.2.2)

beta vulgaris

 

bvg

109376

Brassica oleracea (v2.1)

brassica oleracea

 

boe

3708

Brassica napus
(AST_PRJEB5043_v1)

brassica napus

 

bna

29730

Gossypium raimondii
(Graimondii2_0)

gossypium raimondii

 

gra

3871

Lupinus angustifolius
(LupAngTanjil_v1.0)

lupinus angustifolius

 

lang

4232

Helianthus annuus
(HanXRQr1.0)

helianthus annuus

 

han

3983

Manihot esculenta (Manihot_esculenta_v6)

manihot esculenta

 

 

4528

Oryza longistaminata
(O_longistaminata_v1.0)

oryza longistaminata

 

 

4529

Oryza rufipogon
(OR_W1943)

oryza rufipogon

common wild rice

 

4536

Oryza nivara
(AWHD00000000)

oryza nivara

 

 

4537

Oryza punctata
(AVCL00000000)

oryza punctata

 

 

4538

Oryza glaberrima
(AGI1.1)

oryza glaberrima

African rice

 

4565

Triticum aestivum
(TGACv1)

triticum aestivum

 

 

4572

Triticum urartu
(ASM34745v1)

triticum urartu

an einkorn

 

37682

Aegilops tauschii
(ASM34733v1)

aegilops tauschii

Tauschs goatgrass

ats

39946

Oryza sativa Indica (ASM465v1)

oryza indica

Indica rice

 

40148

Oryza glumaepatula
(ALNU02000000)

oryza glumaepatula

 

 

40149

Oryza meridionalis
(Oryza_meridionalis_v1.3)

oryza meridionalis

Oryza meridionalis

49451

Nicotiana attenuata
str. UT (NIATTr2)

nicotiana attenuata

 

 

51351

Brassica rapa
(IVFCAASv1)

brassica rapa

field mustard

brp

55577

Dioscorea rotundata
(TDr96_F1_Pseudo_Chromosome_v1.0)

dioscorea rotundata

 

 

57577

Trifolium pratense (Trpr)

trifolium pratense

 

 

65489

Oryza barthii (O.barthii_v1)

oryza barthii

African wild rice

 

77586

Leersia perrieri (Lperr_V1.4)

leersia perrieri

Leersia

 

112509

Hordeum vulgare (IBSC v2)

hordeum vulgare

Barley

 

210143

Corchorus capsularis (CCACVL1_1.0)

corchorus capsularis

 

 

 

 

 

 

 

Ensembl Metazoa (Release 40)

 

 

 

taxon_id

Genome

Academic Name

Common Name

KEGG

7668

Strongylocentrotus purpuratus
(Spur_3.1)

strongylocentrotus purpuratus

purple sea urchin

spu

46245

Drosophila pseudoobscura
(Dpse_3.0)

drosophila pseudoobscura

 

dpo

45351

Nematostella vectensis (ASM20922v1)

nematostella vectensis

starlet sea anemone

nve

7070

Tribolium castaneum (Tcas5.2)

tribolium castaneum

red flour beetle

tca

6279

Brugia malayi (Bmal-4.0)

brugia malayi

 

bmy

7159

Aedes aegypti (AaegL3)

aedes aegypti

yellow fever mosquito

aag

6238

Caenorhabditis briggsae
(CB4)

caenorhabditis briggsae

 

cbr

7460

Apis mellifera (Amel_4.5)

apis mellifera

European honey bee

ame

7217

Drosophila ananassae
(dana_caf1)

drosophila ananassae

 

dan

7220

Drosophila erecta
(dere_caf1)

drosophila erecta

 

der

7222

Drosophila grimshawi
(dgri_caf1)

drosophila grimshawi

 

dgr

7230

Drosophila mojavensis
(dmoj_caf1)

drosophila mojavensis

 

dmo

7234

Drosophila persimilis
(dper_caf1)

drosophila persimilis

 

dpe

7238

Drosophila sechellia
(dsec_caf1)

drosophila sechellia

 

dse

7240

Drosophila simulans
(ASM75419v3)

drosophila simulans

 

dsi

7244

Drosophila virilis
(dvir_caf1)

drosophila virilis

 

dvi

7260

Drosophila willistoni
(dwil_caf1)

drosophila willistoni

 

dwi

7245

Drosophila yakuba
(dyak_caf1)

drosophila yakuba

 

dya

10228

Trichoplax adhaerens
(ASM15027v1)

trichoplax adhaerens

 

tad

7029

Acyrthosiphon pisum (Acyr_2.0)

acyrthosiphon pisum

pea aphid

api

7176

Culex quinquefasciatus
(CpipJ2)

culex quinquefasciatus

southern house mosquito

cqu

7425

Nasonia vitripennis (Nvit_2.1)

nasonia vitripennis

jewel wasp

nvi

6183

Schistosoma mansoni
(ASM23792v2)

schistosoma mansoni

blood fluke

smm

6945

Ixodes scapularis
(IscaW1)

ixodes scapularis

black-legged tick

isc

121224

Pediculus humanus (PhumU2)

pediculus humanus

 

phu

6334

Trichinella spiralis (Tspiralis1)

trichinella spiralis

pork worm

tsp

400682

Amphimedon queenslandica (Aqu1)

amphimedon queenslandica

 

aqu

7209

Loa loa
(Loa_loa_V3)

loa loa

eye worm

loa

7091

Bombyx mori (ASM15162v1)

bombyx mori

silkworm

bmor

6412

Helobdella robusta (Helro1)

helobdella robusta

freshwater leech

hro

225164

Lottia gigantea (Lotgi1)

lottia gigantea

owl limpet

lgi

13686

Solenopsis invicta (Si_gnG)

solenopsis invicta

red fire ant

soc

29159

Crassostrea gigas
(oyster_v9)

crassostrea gigas

Pacific oyster

crg

37653

Octopus bimaculoides
(PRJNA270931)

octopus bimaculoides

California two-spot octopus

obi

6669

Daphnia pulex
(V1.0)

daphnia pulex

common water flea

dpx

132113

Bombus impatiens (BIMP_2.0)

bombus impatiens

 

bim

30195

Bombus terrestris
(Bter_1.0)

bombus terrestris

buff-tailed bumblebee

bter

77166

Dendroctonus ponderosae (DendPond_male_1.0)

dendroctonus ponderosae

mountain pine beetle

dpa

32264

Tetranychus urticae (ASM23943v1)

tetranychus urticae

two-spotted spider mite

tut

7574

Lingula anatina
(LinAna1.0)

lingula anatina

 

lak

12957

Atta cephalotes
(Attacep1.0)

atta cephalotes

leaf-cutter ant

acep

136037

Zootermopsis nevadensis (ZooNev1.0)

zootermopsis nevadensis

Nevada dampwood
termite

zne

6282

Onchocerca volvulus (ASM49940v2)

onchocerca volvulus

 

 

7165

Anopheles gambiae (AgamP4)

anopheles gambiae

African malaria mosquito

aga

7375

Lucilia cuprina (ASM118794v1)

lucilia cuprina

 

 

13037

Danaus plexippus
(Dpv3)

danaus plexippus

monarch butterfly

dpl

13249

Rhodnius prolixus (RproC3)

rhodnius prolixus

 

 

27923

Mnemiopsis leidyi (MneLei_Aug2011)

mnemiopsis leidyi

warty comb jelly

 

31234

Caenorhabditis remanei
(C_remanei-15.0.1)

caenorhabditis remanei

 

 

34506

Strongyloides ratti (S_ratti_ED321_v5_0_4)

strongyloides ratti

 

 

34740

Heliconius melpomene (Hmel1)

heliconius melpomene

postman butterfly

 

35525

Daphnia magna str. Xinb3 (daphmag2.4)

daphnia magna

 

 

36166

Megaselia scalaris (Msca1)

megaselia scalaris

 

 

39758

Mayetiola destructor (Mdes_1.0)

mayetiola destructor

Hessian fly

 

43151

Anopheles darlingi
(AdarC3)

anopheles darlingi

 

 

52283

Sarcoptes scabiei (SscaA1)

sarcoptes scabiei

 

 

54126

Pristionchus pacificus (P_pacificus-5.0)

pristionchus pacificus

 

 

72036

Lepeophtheirus salmonis (LSalAtl2s)

lepeophtheirus salmonis

Salmon louse

 

104782

Adineta vaga (AMS_PRJEB1171_v1)

adineta vaga

 

 

113334

Melitaea cinxia (MelCinx1.0)

melitaea cinxia

Glanville fritillary

 

126957

Strigamia maritima (Smar1)

strigamia maritima

 

 

135651

Caenorhabditis brenneri
(C_brenneri-6.0.1b)

caenorhabditis brenneri

 

 

139649

Teleopsis dalmanni
(Tel_dalmanni_2A_v1.0)

teleopsis dalmanni

 

 

217634

Anoplophora glabripennis (Agla_1.0)

anoplophora glabripennis

 

 

281687

Caenorhabditis japonica (C_japonica-7.0.1)

caenorhabditis japonica

 

 

283909

Capitella teleta (Capitella
teleta v1.0)

capitella teleta

bristle worm

 

315563

Belgica antarctica (ASM77530v1)

belgica antarctica

 

 

407821

Stegodyphus mimosarum
(Stegodyphus_mimosarum_v1)

stegodyphus mimosarum

 

 

669202

Thelohanellus kitauei (ASM82789v1)

thelohanellus kitauei

 

 

 

 

 

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