Genome annotation for 220 species was retrieved from Ensembl (release 92), Ensembl metazoa (release 40) and Ensembl plants (release 40) as of 7/15/2018.
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Ensembl (Release 92) |
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taxon_id |
Genome |
Academic Name |
Common Name |
KEGG |
|
6239 |
Caenorhabditis elegans (WBcel235) |
caenorhabditis elegans |
C.elegans |
cel |
|
7227 |
Fruitfly (BDGP6) |
drosophila melanogaster |
fruit fly |
dme |
|
9606 |
Human (GRCh38.p12) |
homo sapiens |
human |
hsa |
|
10090 |
Mouse (GRCm38.p6) |
mus musculus |
house mouse |
mmu |
|
10116 |
Rat (Rnor_6.0) |
rattus norvegicus |
Norway rat |
rno |
|
7955 |
Zebrafish (GRCz11) |
danio rerio |
zebrafish |
dre |
|
9598 |
Chimpanzee (Pan_tro_3.0) |
pan troglodytes |
chimpanzee |
ptr |
|
9031 |
Chicken (Gallus_gallus-5.0) |
gallus gallus |
chicken |
gga |
|
9615 |
Dog (CanFam3.1) |
canis familiaris |
dog |
cfa |
|
9913 |
Cow (UMD3.1) |
bos taurus |
cattle |
bta |
|
9823 |
Pig (Sscrofa11.1) |
sus scrofa |
pig |
ssc |
|
8364 |
Xenopus (JGI 4.2) |
xenopus tropicalis |
western clawed frog |
xtr |
|
9544 |
Macaque (Mmul_8.0.1) |
macaca mulatta |
rhesus monkey |
mcc |
|
13616 |
Opossum (monDom5) |
monodelphis domestica |
gray short-tailed opossum |
mdo |
|
9258 |
Platypus (OANA5) |
ornithorhynchus anatinus |
platypus |
oaa |
|
7719 |
C.intestinalis (KH) |
ciona intestinalis |
Sea squirt Ciona |
cin |
|
9796 |
Horse (Equ Cab 2) |
equus caballus |
horse |
ecb |
|
59729 |
Zebra Finch (taeGut3.2.4) |
taeniopygia guttata |
zebra finch |
tgu |
|
9646 |
Panda (ailMel1) |
ailuropoda melanoleuca |
giant panda |
aml |
|
9601 |
Orangutan (PPYG2) |
pongo abelii |
Bornean orangutan |
pon |
|
9103 |
Turkey (Turkey_2.01) |
meleagris gallopavo |
domestic turkey |
mgp |
|
28377 |
Anole lizard (AnoCar2.0) |
anolis carolinensis |
green anole |
acs |
|
9597 |
Bonobo (panpan1.1) |
pan paniscus |
bonobo |
pps |
|
9305 |
Tasmanian devil (Devil_ref |
sarcophilus harrisii |
Tasmanian devil |
shr |
|
9685 |
Cat (Felis_catus_8.0) |
felis catus |
domestic cat |
fca |
|
31033 |
Fugu (FUGU 4.0) |
takifugu rubripes |
torafugu |
tru |
|
9595 |
Gorilla (gorGor4) |
gorilla gorilla |
Western Lowland Gorilla |
ggo |
|
8090 |
Medaka (HdrR) |
oryzias latipes |
Japanese medaka |
ola |
|
10181 |
Naked mole-rat female (HetGla_female_1.0) |
heterocephalus glaber female |
naked mole-rat |
hgl |
|
10181 |
Naked mole-rat male (HetGla_1.0) |
heterocephalus glaber male |
naked mole-rat |
hgl |
|
10029 |
Chinese hamster CriGri |
cricetulus griseus crigri |
Chinese hamster |
cge |
|
10029 |
Chinese hamster CHOK1GS (CHOK1GS_HDv1) |
cricetulus griseus chok1gshd |
Chinese hamster |
cge |
|
59894 |
Flycatcher (FicAlb_1.4) |
ficedula albicollis |
Collared flycatcher |
fab |
|
8839 |
Duck (BGI_duck_1.0) |
anas platyrhynchos |
mallard |
apla |
|
9925 |
Goat (ARS1) |
capra hircus |
goat |
chx |
|
7897 |
Coelacanth (LatCha1) |
latimeria chalumnae |
coelacanth |
lcm |
|
9541 |
Crab-eating macaque (Macaca_fascicularis_5.0) |
macaca fascicularis |
Crab-eating macaque |
mcf |
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8083 |
Platyfish (Xipmac4.4.2) |
xiphophorus maculatus |
southern platyfish |
xma |
|
13735 |
Chinese softshell turtle (PelSin_1.0) |
pelodiscus sinensis |
Chinese softshell turtle |
pss |
|
9940 |
Sheep (Oar_v3.1) |
ovis aries |
Domestic sheep |
oas |
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9483 |
Marmoset (ASM275486v1) |
callithrix jacchus |
white-tufted-ear marmoset |
cjc |
|
61853 |
Gibbon (Nleu_3.0) |
nomascus leucogenys |
Northern white-cheeked gibbon |
nle |
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1026970 |
Upper Galilee mountains blind mole rat (S.galili_v1.0) |
nannospalax galili |
Upper Galilee mountains blind mole rat |
ngi |
|
9986 |
Rabbit (OryCun2.0) |
oryctolagus cuniculus |
rabbit |
ocu |
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61622 |
Golden snub-nosed monkey (Rrox_v1) |
rhinopithecus roxellana |
Golden snub-nosed monkey |
rro |
|
99883 |
Tetraodon (TETRAODON 8.0) |
tetraodon nigroviridis |
spotted green pufferfish |
tng |
|
39432 |
Bolivian squirrel monkey (SaiBol1.0) |
saimiri boliviensis boliviensis |
Bolivian squirrel monkey |
sbq |
|
9785 |
Elephant (Loxafr3.0) |
loxodonta africana |
African savanna elephant |
lav |
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60711 |
Vervet-AGM (ChlSab1.1) |
chlorocebus sabaeus |
African green monkey |
csab |
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61621 |
Black snub-nosed monkey (ASM169854v1) |
rhinopithecus bieti |
Black snub-nosed monkey |
rbb |
|
7994 |
Cave fish (AstMex102) |
astyanax mexicanus |
Blind cave fish |
amex |
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4932 |
Saccharomyces cerevisiae (R64-1-1) |
saccharomyces cerevisiae |
bakers yeast |
sce |
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7757 |
Lamprey (Pmarinus_7.0) |
petromyzon marinus |
sea lamprey |
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|
7918 |
Spotted gar (LepOcu1) |
lepisosteus oculatus |
Spotted gar |
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|
8049 |
Cod (gadMor1) |
gadus morhua |
Atlantic cod |
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|
8128 |
Tilapia (Orenil1.0) |
oreochromis niloticus |
Nile tilapia |
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9315 |
Wallaby (Meug_1.0) |
notamacropus eugenii |
tammar wallaby |
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9358 |
Sloth (choHof1) |
choloepus hoffmanni |
Hoffmanns two-fingered sloth |
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|
9361 |
Armadillo (Dasnov3.0) |
dasypus novemcinctus |
nine-banded armadillo |
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|
9365 |
Hedgehog (eriEur1) |
erinaceus europaeus |
western European hedgehog |
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|
9371 |
Lesser hedgehog tenrec (TENREC) |
echinops telfairi |
small Madagascar hedgehog |
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|
9531 |
Sooty mangabey |
cercocebus atys |
Sooty mangabey |
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|
9545 |
Pig-tailed macaque (Mnem_1.0) |
macaca nemestrina |
Pig-tailed macaque |
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|
9555 |
Olive baboon (Panu_3.0) |
papio anubis |
Olive baboon |
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|
9568 |
Drill (Mleu.le_1.0) |
mandrillus leucophaeus |
Drill |
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|
9669 |
Ferret (MusPutFur1.0) |
mustela putorius furo |
Domestic ferret |
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|
9739 |
Dolphin (turTru1) |
tursiops truncatus |
bottlenosed dolphin |
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|
9813 |
Hyrax (proCap1) |
procavia capensis |
cape rock hyrax |
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|
9978 |
Pika (OchPri2.0-Ens) |
ochotona princeps |
American pika |
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|
10020 |
Kangaroo rat (Dord_2.0) |
dipodomys ordii |
Ords kangaroo rat |
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|
10036 |
Golden Hamster (MesAur1.0) |
mesocricetus auratus |
Golden Hamster |
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|
10089 |
Ryukyu mouse (CAROLI_EIJ_v1.1) |
mus caroli |
Ryukyu mouse |
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|
10093 |
Shrew mouse (PAHARI_EIJ_v1.1) |
mus pahari |
Shrew mouse |
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|
10096 |
Algerian mouse (SPRET_EiJ_v1) |
mus spretus |
algerian mouse |
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|
10141 |
Guinea Pig (Cavpor3.0) |
cavia porcellus |
domestic guinea pig |
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|
10160 |
Degu (OctDeg1.0) |
octodon degus |
Degu |
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|
30538 |
Alpaca (vicPac1) |
vicugna pacos |
alpaca |
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|
30608 |
Mouse Lemur (Mmur_3.0) |
microcebus murinus |
gray mouse lemur |
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|
30611 |
Bushbaby (OtoGar3) |
otolemur garnettii |
small-eared galago |
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|
34839 |
Long-tailed chinchilla (ChiLan1.0) |
chinchilla lanigera |
Long-tailed chinchilla |
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|
37293 |
Mas night monkey (Anan_2.0) |
aotus nancymaae |
Mas night monkey |
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|
37347 |
Tree Shrew (tupBel1) |
tupaia belangeri |
northern tree shrew |
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|
37548 |
Brazilian guinea pig (CavAp1.0) |
cavia aperea |
Brazilian guinea pig |
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|
42254 |
Shrew (sorAra1) |
sorex araneus |
European shrew |
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|
43179 |
Squirrel (SpeTri2.0) |
ictidomys tridecemlineatus |
thirteen-lined ground squirrel |
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|
48698 |
Amazon molly (Poecilia_formosa-5.1.2) |
poecilia formosa |
Amazon molly |
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51337 |
Lesser Egyptian jerboa (JacJac1.0) |
jaculus jaculus |
Lesser Egyptian jerboa |
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51511 |
C.savignyi (CSAV 2.0) |
ciona savignyi |
Sea squirt Ciona savignyi |
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|
59463 |
Microbat (Myoluc2.0) |
myotis lucifugus |
little brown bat |
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|
69293 |
Stickleback (BROAD S1) |
gasterosteus aculeatus |
three-spined |
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|
79684 |
Prairie vole (MicOch1.0) |
microtus ochrogaster |
vole |
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132908 |
Megabat (pteVam1) |
pteropus vampyrus |
large flying fox |
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230844 |
Northern American deer mouse (Pman_1.0) |
peromyscus maniculatus bairdii |
Northern American deer mouse |
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336983 |
Angola colobus (Cang.pa_1.0) |
colobus angolensis palliatus |
Angola colobus |
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379532 |
Coquerels sifaka (Pcoq_1.0) |
propithecus coquereli |
Coquerels sifaka |
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885580 |
Damara mole rat (DMR_v1.0) |
fukomys damarensis |
Damara mole rat |
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1737458 |
Capuchin (Cebus_imitator-1.0) |
cebus capucinus |
White-headed capuchin |
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1868482 |
Tarsier (Tarsius_syrichta-2.0.1) |
carlito syrichta |
Philippine tarsier |
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Ensembl Plants |
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taxon_id |
Genome |
Academic Name |
Common Name |
KEGG |
|
3702 |
Arabidopsis thaliana (TAIR10) |
arabidopsis thaliana |
thale-cress |
ath |
|
280699 |
Cyanidioschyzon merolae (ASM9120v1) |
cyanidioschyzon merolae |
a red algae |
cme |
|
39947 |
Oryza sativa Japonica (IRGSP-1.0) |
oryza sativa |
Japonica rice |
osa |
|
436017 |
Ostreococcus lucimarinus (ASM9206v1) |
ostreococcus lucimarinus |
a green algae |
olu |
|
3055 |
Chlamydomonas reinhardtii |
chlamydomonas reinhardtii |
a green algae |
cre |
|
3218 |
Physcomitrella patens (ASM242v1) |
physcomitrella patens |
a moss |
ppp |
|
3694 |
Populus trichocarpa (JGI2.0) |
populus trichocarpa |
western balsam poplar |
pop |
|
29760 |
Vitis vinifera (IGGP_12x) |
vitis vinifera |
wine grape |
vvi |
|
4558 |
Sorghum bicolor (Sorghum_bicolor_NCBIv3) |
sorghum bicolor |
|
sbi |
|
4577 |
Zea mays (B73 RefGen_v4) |
zea mays |
maize |
zma |
|
88036 |
Selaginella moellendorffii (v1.0) |
selaginella moellendorffii |
a spike moss |
smo |
|
81972 |
Arabidopsis lyrata |
arabidopsis lyrata |
lyrate rockcress |
aly |
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3847 |
Glycine max (Glycine_max_v2.0) |
glycine max |
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gmx |
|
3880 |
Medicago truncatula |
medicago truncatula |
barrel medic |
mtr |
|
15368 |
Brachypodium distachyon (v1.0) |
brachypodium distachyon |
purple false brome |
bdi |
|
3659 |
Cucumis sativus (ASM407v2) |
cucumis sativus |
|
csv |
|
4081 |
Solanum lycopersicum |
solanum lycopersicum |
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sly |
|
4555 |
Setaria italica (JGIv2.0) |
setaria italica |
foxtail millet |
sita |
|
2769 |
Chondrus crispus (ASM35022v2) |
chondrus crispus |
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ccp |
|
130081 |
Galdieria sulphuraria (ASM34128v1) |
galdieria sulphuraria |
|
gsl |
|
4113 |
Solanum tuberosum (SolTub_3.0) |
solanum tuberosum |
potato |
sot |
|
13333 |
Amborella trichopoda (AMTR1.0) |
amborella trichopoda |
Amborella |
atr |
|
3641 |
Theobroma cacao (Theobroma_cacao_20110822) |
theobroma cacao |
cocoa |
tcc |
|
4533 |
Oryza brachyantha |
oryza brachyantha |
|
obr |
|
3760 |
Prunus persica |
prunus persica |
|
pper |
|
3885 |
Phaseolus vulgaris (PhaVulg1_0) |
phaseolus vulgaris |
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pvu |
|
214687 |
Musa acuminata |
musa acuminata |
banana |
mus |
|
3555 |
Beta vulgaris subsp. vulgaris (RefBeet-1.2.2) |
beta vulgaris |
|
bvg |
|
109376 |
Brassica oleracea (v2.1) |
brassica oleracea |
|
boe |
|
3708 |
Brassica napus |
brassica napus |
|
bna |
|
29730 |
Gossypium raimondii |
gossypium raimondii |
|
gra |
|
3871 |
Lupinus angustifolius |
lupinus angustifolius |
|
lang |
|
4232 |
Helianthus annuus |
helianthus annuus |
|
han |
|
3983 |
Manihot esculenta (Manihot_esculenta_v6) |
manihot esculenta |
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|
4528 |
Oryza longistaminata |
oryza longistaminata |
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|
4529 |
Oryza rufipogon |
oryza rufipogon |
common wild rice |
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|
4536 |
Oryza nivara |
oryza nivara |
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|
4537 |
Oryza punctata |
oryza punctata |
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|
4538 |
Oryza glaberrima |
oryza glaberrima |
African rice |
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|
4565 |
Triticum aestivum |
triticum aestivum |
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|
4572 |
Triticum urartu |
triticum urartu |
an einkorn |
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|
37682 |
Aegilops tauschii |
aegilops tauschii |
Tauschs goatgrass |
ats |
|
39946 |
Oryza sativa Indica (ASM465v1) |
oryza indica |
Indica rice |
|
|
40148 |
Oryza glumaepatula |
oryza glumaepatula |
|
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|
40149 |
Oryza meridionalis |
oryza meridionalis |
Oryza meridionalis |
|
|
49451 |
Nicotiana attenuata |
nicotiana attenuata |
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|
51351 |
Brassica rapa |
brassica rapa |
field mustard |
brp |
|
55577 |
Dioscorea rotundata |
dioscorea rotundata |
|
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|
57577 |
Trifolium pratense (Trpr) |
trifolium pratense |
|
|
|
65489 |
Oryza barthii (O.barthii_v1) |
oryza barthii |
African wild rice |
|
|
77586 |
Leersia perrieri (Lperr_V1.4) |
leersia perrieri |
Leersia |
|
|
112509 |
Hordeum vulgare (IBSC v2) |
hordeum vulgare |
Barley |
|
|
210143 |
Corchorus capsularis (CCACVL1_1.0) |
corchorus capsularis |
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Ensembl Metazoa (Release 40) |
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taxon_id |
Genome |
Academic Name |
Common Name |
KEGG |
|
7668 |
Strongylocentrotus purpuratus |
strongylocentrotus purpuratus |
purple sea urchin |
spu |
|
46245 |
Drosophila pseudoobscura |
drosophila pseudoobscura |
|
dpo |
|
45351 |
Nematostella vectensis (ASM20922v1) |
nematostella vectensis |
starlet sea anemone |
nve |
|
7070 |
Tribolium castaneum (Tcas5.2) |
tribolium castaneum |
red flour beetle |
tca |
|
6279 |
Brugia malayi (Bmal-4.0) |
brugia malayi |
|
bmy |
|
7159 |
Aedes aegypti (AaegL3) |
aedes aegypti |
yellow fever mosquito |
aag |
|
6238 |
Caenorhabditis briggsae |
caenorhabditis briggsae |
|
cbr |
|
7460 |
Apis mellifera (Amel_4.5) |
apis mellifera |
European honey bee |
ame |
|
7217 |
Drosophila ananassae |
drosophila ananassae |
|
dan |
|
7220 |
Drosophila erecta |
drosophila erecta |
|
der |
|
7222 |
Drosophila grimshawi |
drosophila grimshawi |
|
dgr |
|
7230 |
Drosophila mojavensis |
drosophila mojavensis |
|
dmo |
|
7234 |
Drosophila persimilis |
drosophila persimilis |
|
dpe |
|
7238 |
Drosophila sechellia |
drosophila sechellia |
|
dse |
|
7240 |
Drosophila simulans |
drosophila simulans |
|
dsi |
|
7244 |
Drosophila virilis |
drosophila virilis |
|
dvi |
|
7260 |
Drosophila willistoni |
drosophila willistoni |
|
dwi |
|
7245 |
Drosophila yakuba |
drosophila yakuba |
|
dya |
|
10228 |
Trichoplax adhaerens |
trichoplax adhaerens |
|
tad |
|
7029 |
Acyrthosiphon pisum (Acyr_2.0) |
acyrthosiphon pisum |
pea aphid |
api |
|
7176 |
Culex quinquefasciatus |
culex quinquefasciatus |
southern house mosquito |
cqu |
|
7425 |
Nasonia vitripennis (Nvit_2.1) |
nasonia vitripennis |
jewel wasp |
nvi |
|
6183 |
Schistosoma mansoni |
schistosoma mansoni |
blood fluke |
smm |
|
6945 |
Ixodes scapularis |
ixodes scapularis |
black-legged tick |
isc |
|
121224 |
Pediculus humanus (PhumU2) |
pediculus humanus |
|
phu |
|
6334 |
Trichinella spiralis (Tspiralis1) |
trichinella spiralis |
pork worm |
tsp |
|
400682 |
Amphimedon queenslandica (Aqu1) |
amphimedon queenslandica |
|
aqu |
|
7209 |
Loa loa |
loa loa |
eye worm |
loa |
|
7091 |
Bombyx mori (ASM15162v1) |
bombyx mori |
silkworm |
bmor |
|
6412 |
Helobdella robusta (Helro1) |
helobdella robusta |
freshwater leech |
hro |
|
225164 |
Lottia gigantea (Lotgi1) |
lottia gigantea |
owl limpet |
lgi |
|
13686 |
Solenopsis invicta (Si_gnG) |
solenopsis invicta |
red fire ant |
soc |
|
29159 |
Crassostrea gigas |
crassostrea gigas |
Pacific oyster |
crg |
|
37653 |
Octopus bimaculoides |
octopus bimaculoides |
California two-spot octopus |
obi |
|
6669 |
Daphnia pulex |
daphnia pulex |
common water flea |
dpx |
|
132113 |
Bombus impatiens (BIMP_2.0) |
bombus impatiens |
|
bim |
|
30195 |
Bombus terrestris |
bombus terrestris |
buff-tailed bumblebee |
bter |
|
77166 |
Dendroctonus ponderosae (DendPond_male_1.0) |
dendroctonus ponderosae |
mountain pine beetle |
dpa |
|
32264 |
Tetranychus urticae (ASM23943v1) |
tetranychus urticae |
two-spotted spider mite |
tut |
|
7574 |
Lingula anatina |
lingula anatina |
|
lak |
|
12957 |
Atta cephalotes |
atta cephalotes |
leaf-cutter ant |
acep |
|
136037 |
Zootermopsis nevadensis (ZooNev1.0) |
zootermopsis nevadensis |
Nevada dampwood |
zne |
|
6282 |
Onchocerca volvulus (ASM49940v2) |
onchocerca volvulus |
|
|
|
7165 |
Anopheles gambiae (AgamP4) |
anopheles gambiae |
African malaria mosquito |
aga |
|
7375 |
Lucilia cuprina (ASM118794v1) |
lucilia cuprina |
|
|
|
13037 |
Danaus plexippus |
danaus plexippus |
monarch butterfly |
dpl |
|
13249 |
Rhodnius prolixus (RproC3) |
rhodnius prolixus |
|
|
|
27923 |
Mnemiopsis leidyi (MneLei_Aug2011) |
mnemiopsis leidyi |
warty comb jelly |
|
|
31234 |
Caenorhabditis remanei |
caenorhabditis remanei |
|
|
|
34506 |
Strongyloides ratti (S_ratti_ED321_v5_0_4) |
strongyloides ratti |
|
|
|
34740 |
Heliconius melpomene (Hmel1) |
heliconius melpomene |
postman butterfly |
|
|
35525 |
Daphnia magna str. Xinb3 (daphmag2.4) |
daphnia magna |
|
|
|
36166 |
Megaselia scalaris (Msca1) |
megaselia scalaris |
|
|
|
39758 |
Mayetiola destructor (Mdes_1.0) |
mayetiola destructor |
Hessian fly |
|
|
43151 |
Anopheles darlingi |
anopheles darlingi |
|
|
|
52283 |
Sarcoptes scabiei (SscaA1) |
sarcoptes scabiei |
|
|
|
54126 |
Pristionchus pacificus (P_pacificus-5.0) |
pristionchus pacificus |
|
|
|
72036 |
Lepeophtheirus salmonis (LSalAtl2s) |
lepeophtheirus salmonis |
Salmon louse |
|
|
104782 |
Adineta vaga (AMS_PRJEB1171_v1) |
adineta vaga |
|
|
|
113334 |
Melitaea cinxia (MelCinx1.0) |
melitaea cinxia |
Glanville fritillary |
|
|
126957 |
Strigamia maritima (Smar1) |
strigamia maritima |
|
|
|
135651 |
Caenorhabditis brenneri |
caenorhabditis brenneri |
|
|
|
139649 |
Teleopsis dalmanni |
teleopsis dalmanni |
|
|
|
217634 |
Anoplophora glabripennis (Agla_1.0) |
anoplophora glabripennis |
|
|
|
281687 |
Caenorhabditis japonica (C_japonica-7.0.1) |
caenorhabditis japonica |
|
|
|
283909 |
Capitella teleta (Capitella |
capitella teleta |
bristle worm |
|
|
315563 |
Belgica antarctica (ASM77530v1) |
belgica antarctica |
|
|
|
407821 |
Stegodyphus mimosarum |
stegodyphus mimosarum |
|
|
|
669202 |
Thelohanellus kitauei (ASM82789v1) |
thelohanellus kitauei |
|
|
